Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm37171-201ENSMUST00000192636 1185 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Gm43474-201ENSMUST00000196415 774 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Olfr1460-ps1-201ENSMUST00000208975 899 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 AC164567.1-201ENSMUST00000219185 960 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 AC106830.1-201ENSMUST00000228032 1003 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
Hoxd3P09027 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Gm16140-201ENSMUST00000117191 1060 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC11.49□□□□□ -0.57
Hoxd3P09027 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC11.49□□□□□ -0.57
Hoxd3P09027 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Gm8597-201ENSMUST00000191525 1109 ntBASIC11.49□□□□□ -0.57
Hoxd3P09027 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Olfr1248-201ENSMUST00000216129 1078 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Gm6018-201ENSMUST00000216090 1306 ntBASIC11.49□□□□□ -0.57
Hoxd3P09027 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC11.49□□□□□ -0.57
Hoxd3P09027 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 AC131743.5-201ENSMUST00000220775 1618 ntBASIC11.49□□□□□ -0.57
Hoxd3P09027 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC11.49□□□□□ -0.57
Hoxd3P09027 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Hoxd3P09027 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Hoxd3P09027 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Hoxd3P09027 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC11.48□□□□□ -0.57
Hoxd3P09027 Gm18737-201ENSMUST00000173594 937 ntBASIC11.48□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms