Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Col3a1P08121 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Col3a1P08121 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC17.44■□□□□ 0.38
Col3a1P08121 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Col3a1P08121 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Col3a1P08121 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.44■□□□□ 0.38
Col3a1P08121 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.44■□□□□ 0.38
Col3a1P08121 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Col3a1P08121 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC17.44■□□□□ 0.38
Col3a1P08121 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC17.44■□□□□ 0.38
Col3a1P08121 Gm42612-201ENSMUST00000197986 623 ntBASIC17.44■□□□□ 0.38
Col3a1P08121 Gm43170-201ENSMUST00000199827 612 ntBASIC17.44■□□□□ 0.38
Col3a1P08121 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.44■□□□□ 0.38
Col3a1P08121 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Col3a1P08121 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col3a1P08121 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Col3a1P08121 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC17.43■□□□□ 0.38
Col3a1P08121 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC17.43■□□□□ 0.38
Col3a1P08121 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col3a1P08121 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col3a1P08121 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.42■□□□□ 0.38
Col3a1P08121 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Carlr-201ENSMUST00000181515 2574 ntBASIC17.42■□□□□ 0.38
Col3a1P08121 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Col3a1P08121 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC17.42■□□□□ 0.38
Col3a1P08121 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC17.42■□□□□ 0.38
Col3a1P08121 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC17.42■□□□□ 0.38
Col3a1P08121 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
Col3a1P08121 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.42■□□□□ 0.38
Col3a1P08121 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Col3a1P08121 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.42■□□□□ 0.38
Col3a1P08121 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.41■□□□□ 0.38
Col3a1P08121 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Col3a1P08121 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Col3a1P08121 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Gm14127-201ENSMUST00000117906 678 ntBASIC17.41■□□□□ 0.38
Col3a1P08121 Gm15957-201ENSMUST00000118893 974 ntBASIC17.41■□□□□ 0.38
Col3a1P08121 Gm33320-201ENSMUST00000192232 530 ntBASIC17.41■□□□□ 0.38
Col3a1P08121 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms