Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.31■□□□□ 0.04
Trim60Q8VI40 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Ank2-226ENSMUST00000189368 339 ntBASIC15.31■□□□□ 0.04
Trim60Q8VI40 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.31■□□□□ 0.04
Trim60Q8VI40 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Trim60Q8VI40 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trim60Q8VI40 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Gm9103-201ENSMUST00000119371 405 ntBASIC15.3■□□□□ 0.04
Trim60Q8VI40 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Gm5682-201ENSMUST00000173402 505 ntBASIC15.3■□□□□ 0.04
Trim60Q8VI40 Gm18856-201ENSMUST00000178096 1374 ntBASIC15.3■□□□□ 0.04
Trim60Q8VI40 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.3■□□□□ 0.04
Trim60Q8VI40 Gm27741-201ENSMUST00000185060 237 ntBASIC15.3■□□□□ 0.04
Trim60Q8VI40 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Gm43347-201ENSMUST00000200226 580 ntBASIC15.3■□□□□ 0.04
Trim60Q8VI40 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim60Q8VI40 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.29■□□□□ 0.04
Trim60Q8VI40 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC15.29■□□□□ 0.04
Trim60Q8VI40 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim60Q8VI40 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim60Q8VI40 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC15.28■□□□□ 0.04
Trim60Q8VI40 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim60Q8VI40 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms