Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Upf3bQ3ULL6 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Upf3bQ3ULL6 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Gm25911-201ENSMUST00000157621 56 ntBASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Rpph1-201ENSMUST00000175096 319 ntBASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 CT025555.1-201ENSMUST00000225901 1217 ntBASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Upf3bQ3ULL6 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Gm4995-201ENSMUST00000117247 432 ntBASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 AC132104.2-201ENSMUST00000215011 266 ntBASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 CT943659.1-201ENSMUST00000215459 326 ntBASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Ndufaf2-202ENSMUST00000223734 556 ntBASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Upf3bQ3ULL6 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms