Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3aQ3ULJ3 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Gm3436-201ENSMUST00000179930 840 ntBASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 AL593843.1-201ENSMUST00000195891 145 ntBASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Gm43438-201ENSMUST00000198133 379 ntBASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3aQ3ULJ3 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Gm12490-201ENSMUST00000120255 560 ntBASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Gm45453-201ENSMUST00000211758 853 ntBASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 AC149588.3-201ENSMUST00000227515 150 ntBASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3aQ3ULJ3 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3aQ3ULJ3 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3aQ3ULJ3 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3aQ3ULJ3 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 87.4 ms