Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Gm15240-201ENSMUST00000118156 720 ntBASIC17.15■□□□□ 0.34
Rnf180Q3U827 Gm13689-201ENSMUST00000119360 685 ntBASIC17.15■□□□□ 0.34
Rnf180Q3U827 Gm2991-201ENSMUST00000173338 480 ntBASIC17.15■□□□□ 0.34
Rnf180Q3U827 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Snora73a-201ENSMUST00000082453 205 ntBASIC17.15■□□□□ 0.34
Rnf180Q3U827 Ankra2-208ENSMUST00000226100 1476 ntBASIC17.15■□□□□ 0.34
Rnf180Q3U827 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Rnf180Q3U827 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Rnf180Q3U827 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC17.14■□□□□ 0.33
Rnf180Q3U827 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Gm10156-201ENSMUST00000122364 462 ntBASIC17.14■□□□□ 0.33
Rnf180Q3U827 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Gm8810-201ENSMUST00000172895 754 ntBASIC17.14■□□□□ 0.33
Rnf180Q3U827 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC17.14■□□□□ 0.33
Rnf180Q3U827 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Rnf180Q3U827 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.14■□□□□ 0.33
Rnf180Q3U827 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Rnf180Q3U827 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC17.13■□□□□ 0.33
Rnf180Q3U827 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC17.13■□□□□ 0.33
Rnf180Q3U827 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Rnf180Q3U827 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Rnf180Q3U827 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Gm38037-201ENSMUST00000192600 1624 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Gm4909-201ENSMUST00000118749 794 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Gm24990-201ENSMUST00000157406 323 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 Gm10608-202ENSMUST00000213924 676 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 Gm18473-201ENSMUST00000220543 868 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 AC155237.1-201ENSMUST00000226196 1279 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 AC123645.1-201ENSMUST00000228469 605 ntBASIC17.11■□□□□ 0.33
Rnf180Q3U827 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Rnf180Q3U827 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms