Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Trim3Q9R1R2 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Trim3Q9R1R2 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Trim3Q9R1R2 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Trim3Q9R1R2 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Trim3Q9R1R2 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Trim3Q9R1R2 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Trim3Q9R1R2 Gm37728-201ENSMUST00000195025 2292 ntBASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Gm8000-201ENSMUST00000188378 592 ntBASIC13.95□□□□□ -0.18
Trim3Q9R1R2 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.95□□□□□ -0.18
Trim3Q9R1R2 AC131586.3-201ENSMUST00000228355 1367 ntBASIC13.95□□□□□ -0.18
Trim3Q9R1R2 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trim3Q9R1R2 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim3Q9R1R2 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Ap5m1-205ENSMUST00000227431 3757 ntBASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm37019-201ENSMUST00000192133 2134 ntBASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm15467-201ENSMUST00000120582 445 ntBASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm12260-201ENSMUST00000122447 411 ntBASIC13.93□□□□□ -0.18
Trim3Q9R1R2 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm27300-201ENSMUST00000184085 97 ntBASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm27335-201ENSMUST00000184758 97 ntBASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC13.93□□□□□ -0.18
Trim3Q9R1R2 Gm43332-201ENSMUST00000202511 1044 ntBASIC13.93□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms