Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.02□□□□□ -0.16
Use1Q9CQ56 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
Use1Q9CQ56 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.02□□□□□ -0.17
Use1Q9CQ56 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Use1Q9CQ56 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Gm3928-201ENSMUST00000121141 1307 ntBASIC14.01□□□□□ -0.17
Use1Q9CQ56 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Gm13418-201ENSMUST00000119097 944 ntBASIC14.01□□□□□ -0.17
Use1Q9CQ56 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Gm37153-201ENSMUST00000193637 231 ntBASIC14.01□□□□□ -0.17
Use1Q9CQ56 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.01□□□□□ -0.17
Use1Q9CQ56 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Use1Q9CQ56 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14□□□□□ -0.17
Use1Q9CQ56 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14□□□□□ -0.17
Use1Q9CQ56 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Use1Q9CQ56 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14□□□□□ -0.17
Use1Q9CQ56 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
Use1Q9CQ56 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14□□□□□ -0.17
Use1Q9CQ56 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC14□□□□□ -0.17
Use1Q9CQ56 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC14□□□□□ -0.17
Use1Q9CQ56 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14□□□□□ -0.17
Use1Q9CQ56 AC159106.1-201ENSMUST00000224421 690 ntBASIC14□□□□□ -0.17
Use1Q9CQ56 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
Use1Q9CQ56 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14□□□□□ -0.17
Use1Q9CQ56 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14□□□□□ -0.17
Use1Q9CQ56 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Use1Q9CQ56 Gm37297-201ENSMUST00000192974 2384 ntBASIC14□□□□□ -0.17
Use1Q9CQ56 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Use1Q9CQ56 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Use1Q9CQ56 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Use1Q9CQ56 Gm37500-201ENSMUST00000192059 1443 ntBASIC13.99□□□□□ -0.17
Use1Q9CQ56 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Use1Q9CQ56 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Use1Q9CQ56 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Use1Q9CQ56 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Use1Q9CQ56 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms