Protein–RNA interactions for Protein: Q99LF4

Rtcb, tRNA-splicing ligase RtcB homolog, mousemouse

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RtcbQ99LF4 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.19■□□□□ 0.5
RtcbQ99LF4 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Gm12585-201ENSMUST00000117307 290 ntBASIC18.19■□□□□ 0.5
RtcbQ99LF4 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC18.19■□□□□ 0.5
RtcbQ99LF4 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Gm37230-201ENSMUST00000194491 818 ntBASIC18.19■□□□□ 0.5
RtcbQ99LF4 AA619741-201ENSMUST00000195095 646 ntBASIC18.19■□□□□ 0.5
RtcbQ99LF4 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Gm6007-201ENSMUST00000208170 823 ntBASIC18.19■□□□□ 0.5
RtcbQ99LF4 AC238811.3-201ENSMUST00000225422 709 ntBASIC18.19■□□□□ 0.5
RtcbQ99LF4 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.19■□□□□ 0.5
RtcbQ99LF4 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RtcbQ99LF4 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC18.18■□□□□ 0.5
RtcbQ99LF4 AY702102-202ENSMUST00000194651 1173 ntBASIC18.18■□□□□ 0.5
RtcbQ99LF4 Gm6916-202ENSMUST00000205523 195 ntBASIC18.18■□□□□ 0.5
RtcbQ99LF4 Gm5035-201ENSMUST00000215581 927 ntBASIC18.18■□□□□ 0.5
RtcbQ99LF4 CT030657.3-201ENSMUST00000222707 1200 ntBASIC18.18■□□□□ 0.5
RtcbQ99LF4 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RtcbQ99LF4 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Olfr286-202ENSMUST00000205305 969 ntBASIC18.17■□□□□ 0.5
RtcbQ99LF4 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RtcbQ99LF4 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RtcbQ99LF4 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 App-207ENSMUST00000227737 2827 ntBASIC18.16■□□□□ 0.5
RtcbQ99LF4 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.16■□□□□ 0.5
RtcbQ99LF4 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RtcbQ99LF4 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RtcbQ99LF4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms