Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC16.84■□□□□ 0.29
Usp28Q5I043 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Usp28Q5I043 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC16.84■□□□□ 0.29
Usp28Q5I043 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.84■□□□□ 0.29
Usp28Q5I043 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
Usp28Q5I043 AV026068-213ENSMUST00000223675 1171 ntBASIC16.84■□□□□ 0.29
Usp28Q5I043 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.84■□□□□ 0.29
Usp28Q5I043 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Usp28Q5I043 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp28Q5I043 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC16.84■□□□□ 0.29
Usp28Q5I043 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Usp28Q5I043 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC16.83■□□□□ 0.28
Usp28Q5I043 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp28Q5I043 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
Usp28Q5I043 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp28Q5I043 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp28Q5I043 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Usp28Q5I043 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp28Q5I043 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Gm10060-201ENSMUST00000212002 111 ntBASIC16.83■□□□□ 0.28
Usp28Q5I043 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC16.83■□□□□ 0.28
Usp28Q5I043 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.83■□□□□ 0.28
Usp28Q5I043 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.83■□□□□ 0.28
Usp28Q5I043 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
Usp28Q5I043 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp28Q5I043 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Usp28Q5I043 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Gm44981-201ENSMUST00000205549 1943 ntBASIC16.82■□□□□ 0.28
Usp28Q5I043 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC16.82■□□□□ 0.28
Usp28Q5I043 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp28Q5I043 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Gm13036-201ENSMUST00000117799 748 ntBASIC16.81■□□□□ 0.28
Usp28Q5I043 Gm13597-201ENSMUST00000121239 375 ntBASIC16.81■□□□□ 0.28
Usp28Q5I043 Gm15593-201ENSMUST00000122085 1008 ntBASIC16.81■□□□□ 0.28
Usp28Q5I043 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Tcf21-202ENSMUST00000218002 1788 ntBASIC16.81■□□□□ 0.28
Usp28Q5I043 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp28Q5I043 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp28Q5I043 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC16.8■□□□□ 0.28
Usp28Q5I043 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp28Q5I043 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp28Q5I043 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp28Q5I043 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp28Q5I043 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp28Q5I043 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms