Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Col28a1Q2UY11 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Gm15165-201ENSMUST00000118140 502 ntBASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.4□□□□□ -0.1
Col28a1Q2UY11 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Col28a1Q2UY11 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.39□□□□□ -0.11
Col28a1Q2UY11 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Gm11594-201ENSMUST00000122313 162 ntBASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Col28a1Q2UY11 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Gm13830-205ENSMUST00000201195 1155 ntBASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col28a1Q2UY11 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms