Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Sox9Q04887 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Sox9Q04887 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox9Q04887 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Sox9Q04887 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Sox9Q04887 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox9Q04887 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Sox9Q04887 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Sox9Q04887 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Sox9Q04887 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Sox9Q04887 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
Sox9Q04887 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC15.23■□□□□ 0.03
Sox9Q04887 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Sox9Q04887 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Gm5479-201ENSMUST00000160578 435 ntBASIC15.23■□□□□ 0.03
Sox9Q04887 Gm8835-201ENSMUST00000173096 1169 ntBASIC15.23■□□□□ 0.03
Sox9Q04887 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Sox9Q04887 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 CT009510.1-201ENSMUST00000227972 270 ntBASIC15.23■□□□□ 0.03
Sox9Q04887 Gm10478-201ENSMUST00000084451 396 ntBASIC15.23■□□□□ 0.03
Sox9Q04887 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Sox9Q04887 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.23■□□□□ 0.03
Sox9Q04887 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Sox9Q04887 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Sox9Q04887 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.22■□□□□ 0.03
Sox9Q04887 Gm12390-201ENSMUST00000117897 397 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC15.22■□□□□ 0.03
Sox9Q04887 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Sox9Q04887 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Sox9Q04887 Gm29310-201ENSMUST00000185468 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21825-201ENSMUST00000185728 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm29109-201ENSMUST00000185895 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21896-201ENSMUST00000186520 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21873-201ENSMUST00000186728 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21794-201ENSMUST00000187056 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21880-201ENSMUST00000187275 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21826-201ENSMUST00000187451 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21198-201ENSMUST00000188393 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21749-201ENSMUST00000189343 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21901-201ENSMUST00000189568 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm29424-201ENSMUST00000189716 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm28599-201ENSMUST00000189838 694 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21867-201ENSMUST00000189917 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm29269-201ENSMUST00000190087 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21722-201ENSMUST00000190153 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm28423-201ENSMUST00000190701 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21899-201ENSMUST00000190745 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21910-201ENSMUST00000191163 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21849-201ENSMUST00000191571 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm28678-201ENSMUST00000191593 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Gm20910-201ENSMUST00000193268 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Sox9Q04887 Gm21871-201ENSMUST00000194621 696 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 AC159896.2-201ENSMUST00000214753 269 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 AC154319.1-201ENSMUST00000216330 312 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 AL589735.1-201ENSMUST00000224353 270 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 AC150560.1-201ENSMUST00000227731 1187 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Sox9Q04887 Gm5356-201ENSMUST00000093326 615 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Olfr582-201ENSMUST00000098212 960 ntBASIC15.22■□□□□ 0.03
Sox9Q04887 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Sox9Q04887 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Sox9Q04887 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Sox9Q04887 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.21■□□□□ 0.03
Sox9Q04887 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sox9Q04887 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sox9Q04887 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sox9Q04887 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sox9Q04887 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms