Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.16■□□□□ 0.34
Col1a1P11087 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Col1a1P11087 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col1a1P11087 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Col1a1P11087 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Col1a1P11087 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Col1a1P11087 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC17.15■□□□□ 0.34
Col1a1P11087 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Gm5303-201ENSMUST00000117943 1252 ntBASIC17.15■□□□□ 0.34
Col1a1P11087 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC17.15■□□□□ 0.34
Col1a1P11087 AC153872.1-201ENSMUST00000199539 128 ntBASIC17.15■□□□□ 0.34
Col1a1P11087 AC150560.1-201ENSMUST00000227731 1187 ntBASIC17.15■□□□□ 0.34
Col1a1P11087 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Col1a1P11087 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC17.15■□□□□ 0.34
Col1a1P11087 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Col1a1P11087 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC17.15■□□□□ 0.34
Col1a1P11087 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col1a1P11087 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Col1a1P11087 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Col1a1P11087 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Col1a1P11087 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
Col1a1P11087 Gm45667-201ENSMUST00000210380 1316 ntBASIC17.14■□□□□ 0.33
Col1a1P11087 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
Col1a1P11087 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Col1a1P11087 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC17.14■□□□□ 0.33
Col1a1P11087 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC17.14■□□□□ 0.33
Col1a1P11087 Gm10275-202ENSMUST00000168697 495 ntBASIC17.14■□□□□ 0.33
Col1a1P11087 Mir6420-201ENSMUST00000185032 102 ntBASIC17.14■□□□□ 0.33
Col1a1P11087 Gm5279-201ENSMUST00000199575 745 ntBASIC17.14■□□□□ 0.33
Col1a1P11087 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Gm10275-201ENSMUST00000092620 635 ntBASIC17.14■□□□□ 0.33
Col1a1P11087 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.14■□□□□ 0.33
Col1a1P11087 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Gm14452-201ENSMUST00000118680 1632 ntBASIC17.14■□□□□ 0.33
Col1a1P11087 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.14■□□□□ 0.33
Col1a1P11087 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col1a1P11087 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 AC154527.2-201ENSMUST00000225256 1466 ntBASIC17.13■□□□□ 0.33
Col1a1P11087 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC17.13■□□□□ 0.33
Col1a1P11087 Gm5425-201ENSMUST00000214125 459 ntBASIC17.13■□□□□ 0.33
Col1a1P11087 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Col1a1P11087 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col1a1P11087 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Col1a1P11087 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.13■□□□□ 0.33
Col1a1P11087 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.13■□□□□ 0.33
Col1a1P11087 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col1a1P11087 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col1a1P11087 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 Gm27892-201ENSMUST00000185017 106 ntBASIC17.12■□□□□ 0.33
Col1a1P11087 Ighv1-25-201ENSMUST00000195638 345 ntBASIC17.12■□□□□ 0.33
Col1a1P11087 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC17.12■□□□□ 0.33
Col1a1P11087 AC154806.6-201ENSMUST00000228192 202 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms