Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Clk3O35492 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.13□□□□□ -0.15
Clk3O35492 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC14.13□□□□□ -0.15
Clk3O35492 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Clk3O35492 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Gm27646-201ENSMUST00000183989 110 ntBASIC14.13□□□□□ -0.15
Clk3O35492 Gm10060-201ENSMUST00000212002 111 ntBASIC14.13□□□□□ -0.15
Clk3O35492 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.13□□□□□ -0.15
Clk3O35492 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Clk3O35492 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC14.13□□□□□ -0.15
Clk3O35492 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Clk3O35492 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Clk3O35492 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Clk3O35492 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk3O35492 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Clk3O35492 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.12□□□□□ -0.15
Clk3O35492 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.12□□□□□ -0.15
Clk3O35492 AC122024.2-201ENSMUST00000220086 871 ntBASIC14.12□□□□□ -0.15
Clk3O35492 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk3O35492 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
Clk3O35492 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.11□□□□□ -0.15
Clk3O35492 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 AC160980.1-201ENSMUST00000224136 970 ntBASIC14.11□□□□□ -0.15
Clk3O35492 Mzt1-203ENSMUST00000227948 952 ntBASIC14.11□□□□□ -0.15
Clk3O35492 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC14.11□□□□□ -0.15
Clk3O35492 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Clk3O35492 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms