Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chd3B1AR17 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC14.51□□□□□ -0.09
Chd3B1AR17 Gm18049-201ENSMUST00000208909 581 ntBASIC14.51□□□□□ -0.09
Chd3B1AR17 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC14.51□□□□□ -0.09
Chd3B1AR17 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC14.51□□□□□ -0.09
Chd3B1AR17 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.51□□□□□ -0.09
Chd3B1AR17 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Chd3B1AR17 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Chd3B1AR17 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Gm43703-201ENSMUST00000200523 763 ntBASIC14.51□□□□□ -0.09
Chd3B1AR17 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Chd3B1AR17 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Chd3B1AR17 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC14.51□□□□□ -0.09
Chd3B1AR17 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chd3B1AR17 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Gm13823-201ENSMUST00000119930 345 ntBASIC14.5□□□□□ -0.09
Chd3B1AR17 Mir7023-201ENSMUST00000185093 64 ntBASIC14.5□□□□□ -0.09
Chd3B1AR17 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Gm16425-201ENSMUST00000118143 3130 ntBASIC14.5□□□□□ -0.09
Chd3B1AR17 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.5□□□□□ -0.09
Chd3B1AR17 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Shroom3-211ENSMUST00000225438 5742 ntBASIC14.5□□□□□ -0.09
Chd3B1AR17 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Chd3B1AR17 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.49□□□□□ -0.09
Chd3B1AR17 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Gm13464-201ENSMUST00000119418 935 ntBASIC14.49□□□□□ -0.09
Chd3B1AR17 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Gm27306-201ENSMUST00000183970 107 ntBASIC14.49□□□□□ -0.09
Chd3B1AR17 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC14.49□□□□□ -0.09
Chd3B1AR17 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.49□□□□□ -0.09
Chd3B1AR17 Efs-202ENSMUST00000227037 2540 ntBASIC14.49□□□□□ -0.09
Chd3B1AR17 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.49□□□□□ -0.09
Chd3B1AR17 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Chd3B1AR17 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Chd3B1AR17 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Chd3B1AR17 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.48□□□□□ -0.09
Chd3B1AR17 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms