Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Gm13015-201ENSMUST00000118674 204 ntBASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Gm17837-201ENSMUST00000186435 985 ntBASIC16.07■□□□□ 0.16
Trim54Q9ERP3 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim54Q9ERP3 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Gm8410-201ENSMUST00000117225 605 ntBASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Gm12151-201ENSMUST00000121374 290 ntBASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Gm43767-201ENSMUST00000198933 381 ntBASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim54Q9ERP3 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Gm29541-201ENSMUST00000191351 678 ntBASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Rbfox2-208ENSMUST00000227930 1218 ntBASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Trim54Q9ERP3 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Gm8116-201ENSMUST00000182917 1201 ntBASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Ighv8-7-201ENSMUST00000194349 297 ntBASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Gm18049-201ENSMUST00000208909 581 ntBASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim54Q9ERP3 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms