Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 AC114585.2-202ENSMUST00000228094 426 ntBASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.1□□□□□ -0.47
RTRAFQ9CQE8 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
RTRAFQ9CQE8 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
RTRAFQ9CQE8 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
RTRAFQ9CQE8 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
RTRAFQ9CQE8 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Gm23547-201ENSMUST00000158210 271 ntBASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Gm20760-201ENSMUST00000179197 648 ntBASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms