Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Gm6296-201ENSMUST00000222599 943 ntBASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 AC154471.1-201ENSMUST00000224418 436 ntBASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ccdc28aQ8CEI3 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Gm12644-201ENSMUST00000119935 606 ntBASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ccdc28aQ8CEI3 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Gm7284-201ENSMUST00000131667 944 ntBASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Ccdc28aQ8CEI3 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Gm21451-201ENSMUST00000111062 2775 ntBASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ccdc28aQ8CEI3 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms