Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Gm12134-201ENSMUST00000122109 520 ntBASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Gm5364-201ENSMUST00000216789 889 ntBASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Thap2-203ENSMUST00000218989 527 ntBASIC15.31■□□□□ 0.04
Trub1Q8C0D0 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trub1Q8C0D0 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Gm10154-201ENSMUST00000084445 354 ntBASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trub1Q8C0D0 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Gm16026-204ENSMUST00000162652 683 ntBASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Gm17968-201ENSMUST00000194902 784 ntBASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trub1Q8C0D0 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Gm12620-201ENSMUST00000119791 1986 ntBASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Gm12612-201ENSMUST00000140182 1986 ntBASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trub1Q8C0D0 Gm8749-201ENSMUST00000117737 331 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms