Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC20.29■□□□□ 0.84
Usp40Q8BWR4 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Syt7-204ENSMUST00000223586 1344 ntBASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Gm5320-201ENSMUST00000207163 1519 ntBASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Gm6222-201ENSMUST00000120787 396 ntBASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Gm7730-201ENSMUST00000212486 454 ntBASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Gm14780-201ENSMUST00000118387 2737 ntBASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp40Q8BWR4 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Cd63-ps-201ENSMUST00000145417 875 ntBASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Gm27838-201ENSMUST00000184829 128 ntBASIC20.27■□□□□ 0.84
Usp40Q8BWR4 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp40Q8BWR4 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC20.27■□□□□ 0.83
Usp40Q8BWR4 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp40Q8BWR4 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp40Q8BWR4 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Gm16215-201ENSMUST00000161990 637 ntBASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 H2-Pa-201ENSMUST00000182803 626 ntBASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp40Q8BWR4 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms