Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msx3P70354 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Msx3P70354 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.03
Msx3P70354 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx3P70354 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx3P70354 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.26■□□□□ 0.03
Msx3P70354 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Msx3P70354 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.26■□□□□ 0.03
Msx3P70354 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
Msx3P70354 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC15.26■□□□□ 0.03
Msx3P70354 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.26■□□□□ 0.03
Msx3P70354 Gm27300-201ENSMUST00000184085 97 ntBASIC15.26■□□□□ 0.03
Msx3P70354 Gm27335-201ENSMUST00000184758 97 ntBASIC15.26■□□□□ 0.03
Msx3P70354 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.26■□□□□ 0.03
Msx3P70354 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Msx3P70354 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Msx3P70354 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC15.25■□□□□ 0.03
Msx3P70354 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Gm12350-201ENSMUST00000121208 462 ntBASIC15.25■□□□□ 0.03
Msx3P70354 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC15.25■□□□□ 0.03
Msx3P70354 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Msx3P70354 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC15.25■□□□□ 0.03
Msx3P70354 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.25■□□□□ 0.03
Msx3P70354 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Msx3P70354 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msx3P70354 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Msx3P70354 Carlr-201ENSMUST00000181515 2574 ntBASIC15.25■□□□□ 0.03
Msx3P70354 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Msx3P70354 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.24■□□□□ 0.03
Msx3P70354 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.24■□□□□ 0.03
Msx3P70354 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Gm23547-201ENSMUST00000158210 271 ntBASIC15.24■□□□□ 0.03
Msx3P70354 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC15.24■□□□□ 0.03
Msx3P70354 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Msx3P70354 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.24■□□□□ 0.03
Msx3P70354 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 AC154527.4-201ENSMUST00000224364 1667 ntBASIC15.24■□□□□ 0.03
Msx3P70354 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Msx3P70354 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.24■□□□□ 0.03
Msx3P70354 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msx3P70354 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.24■□□□□ 0.03
Msx3P70354 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msx3P70354 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms