Protein–RNA interactions for Protein: P15975

Usp53, Inactive ubiquitin carboxyl-terminal hydrolase 53, mousemouse

Predictions only

Length 1,069 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp53P15975 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.18■□□□□ 0.34
Usp53P15975 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Usp53P15975 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Usp53P15975 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC17.18■□□□□ 0.34
Usp53P15975 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
Usp53P15975 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Usp53P15975 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usp53P15975 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Usp53P15975 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.17■□□□□ 0.34
Usp53P15975 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.17■□□□□ 0.34
Usp53P15975 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Gm13015-201ENSMUST00000118674 204 ntBASIC17.17■□□□□ 0.34
Usp53P15975 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC17.17■□□□□ 0.34
Usp53P15975 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 Gm22175-201ENSMUST00000175007 78 ntBASIC17.17■□□□□ 0.34
Usp53P15975 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Gm10576-201ENSMUST00000191927 825 ntBASIC17.17■□□□□ 0.34
Usp53P15975 Gm10253-201ENSMUST00000194270 940 ntBASIC17.17■□□□□ 0.34
Usp53P15975 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Gm42934-201ENSMUST00000196920 1345 ntBASIC17.17■□□□□ 0.34
Usp53P15975 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 AC154767.3-201ENSMUST00000225150 1342 ntBASIC17.17■□□□□ 0.34
Usp53P15975 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Usp53P15975 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usp53P15975 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Usp53P15975 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Usp53P15975 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.16■□□□□ 0.34
Usp53P15975 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC17.16■□□□□ 0.34
Usp53P15975 AA543401-201ENSMUST00000164248 1269 ntBASIC17.16■□□□□ 0.34
Usp53P15975 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC17.16■□□□□ 0.34
Usp53P15975 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC17.16■□□□□ 0.34
Usp53P15975 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Usp53P15975 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.16■□□□□ 0.34
Usp53P15975 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usp53P15975 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Usp53P15975 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Usp53P15975 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC17.15■□□□□ 0.34
Usp53P15975 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Gm7336-201ENSMUST00000107041 1232 ntBASIC17.15■□□□□ 0.34
Usp53P15975 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC17.15■□□□□ 0.34
Usp53P15975 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC17.15■□□□□ 0.34
Usp53P15975 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.15■□□□□ 0.34
Usp53P15975 Gm37277-201ENSMUST00000194052 1111 ntBASIC17.15■□□□□ 0.34
Usp53P15975 Ighv8-7-201ENSMUST00000194349 297 ntBASIC17.15■□□□□ 0.34
Usp53P15975 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.15■□□□□ 0.34
Usp53P15975 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.15■□□□□ 0.34
Usp53P15975 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usp53P15975 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp53P15975 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp53P15975 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms