Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.1□□□□□ -0.15
Lire1P11260 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Lire1P11260 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.1□□□□□ -0.15
Lire1P11260 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Lire1P11260 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Lire1P11260 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.1□□□□□ -0.15
Lire1P11260 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lire1P11260 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.09□□□□□ -0.15
Lire1P11260 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.09□□□□□ -0.15
Lire1P11260 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Gm7507-201ENSMUST00000183053 1008 ntBASIC14.09□□□□□ -0.15
Lire1P11260 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Gm9172-201ENSMUST00000212092 954 ntBASIC14.09□□□□□ -0.15
Lire1P11260 CT943659.1-201ENSMUST00000215459 326 ntBASIC14.09□□□□□ -0.15
Lire1P11260 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.09□□□□□ -0.15
Lire1P11260 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.09□□□□□ -0.15
Lire1P11260 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Lire1P11260 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lire1P11260 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lire1P11260 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Lire1P11260 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Lire1P11260 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Lire1P11260 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.08□□□□□ -0.16
Lire1P11260 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.08□□□□□ -0.16
Lire1P11260 Gm27702-201ENSMUST00000184512 56 ntBASIC14.08□□□□□ -0.16
Lire1P11260 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.08□□□□□ -0.16
Lire1P11260 Gm6089-201ENSMUST00000197666 938 ntBASIC14.08□□□□□ -0.16
Lire1P11260 Gm45683-201ENSMUST00000210825 1247 ntBASIC14.08□□□□□ -0.16
Lire1P11260 Gm8655-201ENSMUST00000221159 852 ntBASIC14.08□□□□□ -0.16
Lire1P11260 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Lire1P11260 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Lire1P11260 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.08□□□□□ -0.16
Lire1P11260 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms