Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chmp6P0C0A3 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chmp6P0C0A3 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chmp6P0C0A3 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Chmp6P0C0A3 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Chmp6P0C0A3 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Chmp6P0C0A3 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.19■□□□□ 0.18
Chmp6P0C0A3 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Gm43332-201ENSMUST00000202511 1044 ntBASIC16.18■□□□□ 0.18
Chmp6P0C0A3 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Chmp6P0C0A3 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Gm13034-201ENSMUST00000121342 3177 ntBASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Gm11594-201ENSMUST00000122313 162 ntBASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Gm5712-201ENSMUST00000199748 1043 ntBASIC16.17■□□□□ 0.18
Chmp6P0C0A3 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Chmp6P0C0A3 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.16■□□□□ 0.18
Chmp6P0C0A3 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chmp6P0C0A3 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms