Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.17□□□□□ -0.14
Clk3O35492 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Clk3O35492 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Clk3O35492 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Clk3O35492 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Clk3O35492 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Clk3O35492 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Clk3O35492 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Clk3O35492 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.16□□□□□ -0.14
Clk3O35492 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Clk3O35492 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.16□□□□□ -0.14
Clk3O35492 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Clk3O35492 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.16□□□□□ -0.14
Clk3O35492 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Clk3O35492 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC14.16□□□□□ -0.14
Clk3O35492 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.16□□□□□ -0.14
Clk3O35492 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Clk3O35492 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.16□□□□□ -0.14
Clk3O35492 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Clk3O35492 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk3O35492 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Clk3O35492 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC14.15□□□□□ -0.14
Clk3O35492 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Gm7230-201ENSMUST00000173026 815 ntBASIC14.15□□□□□ -0.14
Clk3O35492 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.15□□□□□ -0.14
Clk3O35492 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Clk3O35492 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Clk3O35492 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Clk3O35492 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk3O35492 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Clk3O35492 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Clk3O35492 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.14□□□□□ -0.15
Clk3O35492 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Clk3O35492 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Clk3O35492 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Clk3O35492 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.14□□□□□ -0.15
Clk3O35492 Gm15173-201ENSMUST00000122049 433 ntBASIC14.14□□□□□ -0.15
Clk3O35492 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Clk3O35492 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.14□□□□□ -0.15
Clk3O35492 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.14□□□□□ -0.15
Clk3O35492 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk3O35492 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms