Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Prpf40aQ9R1C7 Scarna2-201ENSMUST00000157560 414 ntBASIC24.39■■□□□ 1.49
Prpf40aQ9R1C7 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC24.39■■□□□ 1.49
Prpf40aQ9R1C7 Gm9806-201ENSMUST00000051080 552 ntBASIC24.39■■□□□ 1.49
Prpf40aQ9R1C7 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Prpf40aQ9R1C7 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC24.39■■□□□ 1.49
Prpf40aQ9R1C7 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Prpf40aQ9R1C7 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC24.37■■□□□ 1.49
Prpf40aQ9R1C7 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Prpf40aQ9R1C7 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Prpf40aQ9R1C7 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Prpf40aQ9R1C7 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Prpf40aQ9R1C7 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Prpf40aQ9R1C7 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Prpf40aQ9R1C7 Gm9910-201ENSMUST00000195385 1550 ntBASIC24.36■■□□□ 1.49
Prpf40aQ9R1C7 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Prpf40aQ9R1C7 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
Prpf40aQ9R1C7 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Prpf40aQ9R1C7 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Prpf40aQ9R1C7 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.35■■□□□ 1.49
Prpf40aQ9R1C7 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC24.35■■□□□ 1.49
Prpf40aQ9R1C7 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Prpf40aQ9R1C7 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC24.34■■□□□ 1.49
Prpf40aQ9R1C7 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Prpf40aQ9R1C7 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC24.34■■□□□ 1.49
Prpf40aQ9R1C7 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
Prpf40aQ9R1C7 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Prpf40aQ9R1C7 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Prpf40aQ9R1C7 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Prpf40aQ9R1C7 Gm11687-201ENSMUST00000118911 886 ntBASIC24.33■■□□□ 1.49
Prpf40aQ9R1C7 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Prpf40aQ9R1C7 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Prpf40aQ9R1C7 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Prpf40aQ9R1C7 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
Prpf40aQ9R1C7 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Prpf40aQ9R1C7 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Prpf40aQ9R1C7 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Prpf40aQ9R1C7 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Prpf40aQ9R1C7 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Prpf40aQ9R1C7 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Prpf40aQ9R1C7 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Prpf40aQ9R1C7 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Prpf40aQ9R1C7 Gm16437-201ENSMUST00000025669 507 ntBASIC24.31■■□□□ 1.48
Prpf40aQ9R1C7 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Prpf40aQ9R1C7 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Prpf40aQ9R1C7 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Prpf40aQ9R1C7 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Prpf40aQ9R1C7 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
Prpf40aQ9R1C7 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Prpf40aQ9R1C7 Gm11175-201ENSMUST00000116172 543 ntBASIC24.28■■□□□ 1.48
Prpf40aQ9R1C7 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC24.28■■□□□ 1.48
Prpf40aQ9R1C7 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
Prpf40aQ9R1C7 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Prpf40aQ9R1C7 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Prpf40aQ9R1C7 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC24.27■■□□□ 1.48
Prpf40aQ9R1C7 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Prpf40aQ9R1C7 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Prpf40aQ9R1C7 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Prpf40aQ9R1C7 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
Prpf40aQ9R1C7 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.26■■□□□ 1.47
Prpf40aQ9R1C7 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC24.25■■□□□ 1.47
Prpf40aQ9R1C7 H3f3aos-201ENSMUST00000097448 2905 ntBASIC24.25■■□□□ 1.47
Prpf40aQ9R1C7 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC24.25■■□□□ 1.47
Prpf40aQ9R1C7 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Prpf40aQ9R1C7 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Prpf40aQ9R1C7 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40aQ9R1C7 Mir6538-201ENSMUST00000183713 110 ntBASIC24.24■■□□□ 1.47
Prpf40aQ9R1C7 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40aQ9R1C7 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40aQ9R1C7 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40aQ9R1C7 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Prpf40aQ9R1C7 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Prpf40aQ9R1C7 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Prpf40aQ9R1C7 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.23■■□□□ 1.47
Prpf40aQ9R1C7 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Prpf40aQ9R1C7 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Prpf40aQ9R1C7 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Prpf40aQ9R1C7 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40aQ9R1C7 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
Prpf40aQ9R1C7 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40aQ9R1C7 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40aQ9R1C7 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Prpf40aQ9R1C7 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC24.2■■□□□ 1.46
Prpf40aQ9R1C7 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC24.2■■□□□ 1.46
Prpf40aQ9R1C7 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Prpf40aQ9R1C7 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms