Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh4Q99MT2 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh4Q99MT2 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.55■■□□□ 1.04
Msh4Q99MT2 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Msh4Q99MT2 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh4Q99MT2 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh4Q99MT2 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Msh4Q99MT2 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh4Q99MT2 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.54■■□□□ 1.04
Msh4Q99MT2 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Msh4Q99MT2 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Msh4Q99MT2 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh4Q99MT2 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh4Q99MT2 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Msh4Q99MT2 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.53■■□□□ 1.04
Msh4Q99MT2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.53■■□□□ 1.04
Msh4Q99MT2 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Msh4Q99MT2 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Msh4Q99MT2 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Msh4Q99MT2 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Msh4Q99MT2 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Msh4Q99MT2 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Msh4Q99MT2 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Msh4Q99MT2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Msh4Q99MT2 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Msh4Q99MT2 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Msh4Q99MT2 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Msh4Q99MT2 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Msh4Q99MT2 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
Msh4Q99MT2 Cap2-205ENSMUST00000225824 1634 ntBASIC21.5■■□□□ 1.03
Msh4Q99MT2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Terc-201ENSMUST00000082862 423 ntBASIC21.49■■□□□ 1.03
Msh4Q99MT2 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Msh4Q99MT2 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Msh4Q99MT2 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Msh4Q99MT2 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Msh4Q99MT2 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Msh4Q99MT2 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Msh4Q99MT2 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Msh4Q99MT2 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
Msh4Q99MT2 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Msh4Q99MT2 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Msh4Q99MT2 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Msh4Q99MT2 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Msh4Q99MT2 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.45■■□□□ 1.02
Msh4Q99MT2 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC21.45■■□□□ 1.02
Msh4Q99MT2 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Msh4Q99MT2 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Msh4Q99MT2 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
Msh4Q99MT2 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Msh4Q99MT2 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Msh4Q99MT2 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Msh4Q99MT2 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Msh4Q99MT2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Msh4Q99MT2 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Msh4Q99MT2 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Msh4Q99MT2 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC21.42■■□□□ 1.02
Msh4Q99MT2 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Msh4Q99MT2 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
Msh4Q99MT2 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Msh4Q99MT2 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.42■■□□□ 1.02
Msh4Q99MT2 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
Msh4Q99MT2 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.41■■□□□ 1.02
Msh4Q99MT2 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Msh4Q99MT2 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Msh4Q99MT2 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms