Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lsm1Q8VC85 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lsm1Q8VC85 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC21.38■■□□□ 1.01
Lsm1Q8VC85 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Lsm1Q8VC85 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Lsm1Q8VC85 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Lsm1Q8VC85 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lsm1Q8VC85 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lsm1Q8VC85 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.37■■□□□ 1.01
Lsm1Q8VC85 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Lsm1Q8VC85 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Lsm1Q8VC85 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.36■■□□□ 1.01
Lsm1Q8VC85 AC122317.2-201ENSMUST00000218708 1248 ntBASIC21.36■■□□□ 1.01
Lsm1Q8VC85 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lsm1Q8VC85 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lsm1Q8VC85 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Lsm1Q8VC85 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lsm1Q8VC85 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC21.35■■□□□ 1.01
Lsm1Q8VC85 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Mir3960-201ENSMUST00000198213 73 ntBASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC21.34■■□□□ 1.01
Lsm1Q8VC85 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Lsm1Q8VC85 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Gm7432-201ENSMUST00000210343 879 ntBASIC21.33■■□□□ 1.01
Lsm1Q8VC85 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Lsm1Q8VC85 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Lsm1Q8VC85 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.32■■□□□ 1
Lsm1Q8VC85 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.32■■□□□ 1
Lsm1Q8VC85 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lsm1Q8VC85 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.32■■□□□ 1
Lsm1Q8VC85 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Lsm1Q8VC85 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lsm1Q8VC85 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.31■■□□□ 1
Lsm1Q8VC85 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Lsm1Q8VC85 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lsm1Q8VC85 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lsm1Q8VC85 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lsm1Q8VC85 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.31■■□□□ 1
Lsm1Q8VC85 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.3■■□□□ 1
Lsm1Q8VC85 Gm45364-201ENSMUST00000210883 159 ntBASIC21.3■■□□□ 1
Lsm1Q8VC85 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Lsm1Q8VC85 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lsm1Q8VC85 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lsm1Q8VC85 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lsm1Q8VC85 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.3■■□□□ 1
Lsm1Q8VC85 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21.29■■□□□ 1
Lsm1Q8VC85 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lsm1Q8VC85 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lsm1Q8VC85 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
Lsm1Q8VC85 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.29■■□□□ 1
Lsm1Q8VC85 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lsm1Q8VC85 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.29■■□□□ 1
Lsm1Q8VC85 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21.29■■□□□ 1
Lsm1Q8VC85 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lsm1Q8VC85 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Lsm1Q8VC85 Gm11599-201ENSMUST00000118720 878 ntBASIC21.28■■□□□ 1
Lsm1Q8VC85 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Lsm1Q8VC85 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC21.28■■□□□ 1
Lsm1Q8VC85 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lsm1Q8VC85 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lsm1Q8VC85 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC21.27■■□□□ 1
Lsm1Q8VC85 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Lsm1Q8VC85 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
Lsm1Q8VC85 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC21.27■□□□□ 0.99
Lsm1Q8VC85 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lsm1Q8VC85 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Lsm1Q8VC85 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lsm1Q8VC85 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.25■□□□□ 0.99
Lsm1Q8VC85 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lsm1Q8VC85 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lsm1Q8VC85 Gm28731-201ENSMUST00000185564 1569 ntBASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 261.5 ms