Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Ushbp1Q8R370 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC25.01■■□□□ 1.59
Ushbp1Q8R370 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ushbp1Q8R370 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Ushbp1Q8R370 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC25■■□□□ 1.59
Ushbp1Q8R370 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Ushbp1Q8R370 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Ushbp1Q8R370 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
Ushbp1Q8R370 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Ushbp1Q8R370 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Ushbp1Q8R370 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Ushbp1Q8R370 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
Ushbp1Q8R370 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Ushbp1Q8R370 Gm12818-201ENSMUST00000117562 1349 ntBASIC24.98■■□□□ 1.59
Ushbp1Q8R370 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Ushbp1Q8R370 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
Ushbp1Q8R370 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Ushbp1Q8R370 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Ushbp1Q8R370 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.97■■□□□ 1.59
Ushbp1Q8R370 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
Ushbp1Q8R370 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Ushbp1Q8R370 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
Ushbp1Q8R370 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC24.96■■□□□ 1.59
Ushbp1Q8R370 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
Ushbp1Q8R370 AC122317.2-201ENSMUST00000218708 1248 ntBASIC24.95■■□□□ 1.58
Ushbp1Q8R370 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Ushbp1Q8R370 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Ushbp1Q8R370 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Ushbp1Q8R370 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Ushbp1Q8R370 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Ushbp1Q8R370 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Ushbp1Q8R370 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Ushbp1Q8R370 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
Ushbp1Q8R370 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC24.94■■□□□ 1.58
Ushbp1Q8R370 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ushbp1Q8R370 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ushbp1Q8R370 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ushbp1Q8R370 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ushbp1Q8R370 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC24.92■■□□□ 1.58
Ushbp1Q8R370 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ushbp1Q8R370 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC24.92■■□□□ 1.58
Ushbp1Q8R370 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ushbp1Q8R370 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Ushbp1Q8R370 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.91■■□□□ 1.58
Ushbp1Q8R370 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC24.9■■□□□ 1.58
Ushbp1Q8R370 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC24.9■■□□□ 1.58
Ushbp1Q8R370 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Ushbp1Q8R370 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Ushbp1Q8R370 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Ushbp1Q8R370 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC24.89■■□□□ 1.58
Ushbp1Q8R370 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Ushbp1Q8R370 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC24.89■■□□□ 1.57
Ushbp1Q8R370 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Ushbp1Q8R370 Gm14523-201ENSMUST00000117260 558 ntBASIC24.88■■□□□ 1.57
Ushbp1Q8R370 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Ushbp1Q8R370 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Ushbp1Q8R370 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Ushbp1Q8R370 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Ushbp1Q8R370 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC24.86■■□□□ 1.57
Ushbp1Q8R370 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC24.86■■□□□ 1.57
Ushbp1Q8R370 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
Ushbp1Q8R370 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Ushbp1Q8R370 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Ushbp1Q8R370 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Ushbp1Q8R370 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Ushbp1Q8R370 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Ushbp1Q8R370 AC164433.2-201ENSMUST00000226346 1701 ntBASIC24.84■■□□□ 1.57
Ushbp1Q8R370 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ushbp1Q8R370 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC24.84■■□□□ 1.57
Ushbp1Q8R370 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Ushbp1Q8R370 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Ushbp1Q8R370 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
Ushbp1Q8R370 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Ushbp1Q8R370 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Ushbp1Q8R370 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
Ushbp1Q8R370 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
Ushbp1Q8R370 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
Ushbp1Q8R370 Terc-201ENSMUST00000082862 423 ntBASIC24.82■■□□□ 1.56
Ushbp1Q8R370 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Ushbp1Q8R370 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ushbp1Q8R370 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Ushbp1Q8R370 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC24.81■■□□□ 1.56
Ushbp1Q8R370 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ushbp1Q8R370 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
Ushbp1Q8R370 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.8■■□□□ 1.56
Ushbp1Q8R370 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Ushbp1Q8R370 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Ushbp1Q8R370 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
Ushbp1Q8R370 Gm9910-201ENSMUST00000195385 1550 ntBASIC24.8■■□□□ 1.56
Ushbp1Q8R370 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Ushbp1Q8R370 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Ushbp1Q8R370 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC24.79■■□□□ 1.56
Ushbp1Q8R370 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC24.79■■□□□ 1.56
Ushbp1Q8R370 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
Ushbp1Q8R370 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Ushbp1Q8R370 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Ushbp1Q8R370 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Ushbp1Q8R370 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Ushbp1Q8R370 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Ushbp1Q8R370 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms