Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Nkx3-1P97436 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Nkx3-1P97436 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Nkx3-1P97436 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nkx3-1P97436 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx3-1P97436 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx3-1P97436 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx3-1P97436 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.32■□□□□ 0.68
Nkx3-1P97436 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx3-1P97436 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx3-1P97436 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Nkx3-1P97436 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx3-1P97436 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx3-1P97436 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Nkx3-1P97436 Gm15820-201ENSMUST00000201566 728 ntBASIC19.31■□□□□ 0.68
Nkx3-1P97436 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.31■□□□□ 0.68
Nkx3-1P97436 Gm45444-201ENSMUST00000211394 898 ntBASIC19.31■□□□□ 0.68
Nkx3-1P97436 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.31■□□□□ 0.68
Nkx3-1P97436 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Nkx3-1P97436 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nkx3-1P97436 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nkx3-1P97436 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.29■□□□□ 0.68
Nkx3-1P97436 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.28■□□□□ 0.68
Nkx3-1P97436 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx3-1P97436 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Nkx3-1P97436 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.28■□□□□ 0.68
Nkx3-1P97436 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx3-1P97436 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
Nkx3-1P97436 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx3-1P97436 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx3-1P97436 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx3-1P97436 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx3-1P97436 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Nkx3-1P97436 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.27■□□□□ 0.68
Nkx3-1P97436 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Nkx3-1P97436 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nkx3-1P97436 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.27■□□□□ 0.68
Nkx3-1P97436 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Nkx3-1P97436 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Nkx3-1P97436 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Nkx3-1P97436 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx3-1P97436 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx3-1P97436 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.25■□□□□ 0.67
Nkx3-1P97436 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nkx3-1P97436 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nkx3-1P97436 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Nkx3-1P97436 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Nkx3-1P97436 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.24■□□□□ 0.67
Nkx3-1P97436 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nkx3-1P97436 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Nkx3-1P97436 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nkx3-1P97436 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Nkx3-1P97436 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nkx3-1P97436 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Nkx3-1P97436 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nkx3-1P97436 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nkx3-1P97436 Rps24-207ENSMUST00000224568 714 ntBASIC19.22■□□□□ 0.67
Nkx3-1P97436 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nkx3-1P97436 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nkx3-1P97436 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nkx3-1P97436 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx3-1P97436 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx3-1P97436 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx3-1P97436 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Nkx3-1P97436 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx3-1P97436 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx3-1P97436 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.21■□□□□ 0.67
Nkx3-1P97436 AC164433.2-201ENSMUST00000226346 1701 ntBASIC19.2■□□□□ 0.66
Nkx3-1P97436 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
Nkx3-1P97436 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.19■□□□□ 0.66
Nkx3-1P97436 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx3-1P97436 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Nkx3-1P97436 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx3-1P97436 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx3-1P97436 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Nkx3-1P97436 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx3-1P97436 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.18■□□□□ 0.66
Nkx3-1P97436 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 100 ms