Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Gm6226-201ENSMUST00000117765 1146 ntBASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Gm5049-201ENSMUST00000195878 1590 ntBASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Gm37736-201ENSMUST00000193564 2802 ntBASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Celf4-206ENSMUST00000224553 1729 ntBASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.25■□□□□ 0.03
Vps28Q9D1C8 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gm23935-201ENSMUST00000102303 57 ntBASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gm24270-201ENSMUST00000102326 57 ntBASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gm9385-201ENSMUST00000117563 472 ntBASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gm24245-201ENSMUST00000157318 57 ntBASIC15.24■□□□□ 0.03
Vps28Q9D1C8 AC151286.1-201ENSMUST00000198489 145 ntBASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Vps28Q9D1C8 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Gm11025-201ENSMUST00000140773 466 ntBASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Vps28Q9D1C8 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms