Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.09□□□□□ -0.15
Use1Q9CQ56 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
Use1Q9CQ56 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.08□□□□□ -0.16
Use1Q9CQ56 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.08□□□□□ -0.16
Use1Q9CQ56 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.08□□□□□ -0.16
Use1Q9CQ56 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Use1Q9CQ56 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Gm11780-201ENSMUST00000136880 516 ntBASIC14.07□□□□□ -0.16
Use1Q9CQ56 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.07□□□□□ -0.16
Use1Q9CQ56 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.07□□□□□ -0.16
Use1Q9CQ56 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Use1Q9CQ56 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.06□□□□□ -0.16
Use1Q9CQ56 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.06□□□□□ -0.16
Use1Q9CQ56 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.06□□□□□ -0.16
Use1Q9CQ56 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Use1Q9CQ56 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Use1Q9CQ56 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Use1Q9CQ56 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Use1Q9CQ56 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC14.05□□□□□ -0.16
Use1Q9CQ56 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Use1Q9CQ56 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms