Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm4691-201ENSMUST00000182339 1000 ntBASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm27306-201ENSMUST00000183970 107 ntBASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm28630-201ENSMUST00000187806 498 ntBASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm2451-201ENSMUST00000199447 999 ntBASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm10290-201ENSMUST00000200451 999 ntBASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rab11fip3Q8CHD8 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Gm6756-201ENSMUST00000180647 1620 ntBASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 BC037039-201ENSMUST00000192003 2205 ntBASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Gm13453-201ENSMUST00000118708 357 ntBASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Gm37277-201ENSMUST00000194052 1111 ntBASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rab11fip3Q8CHD8 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rab11fip3Q8CHD8 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Tfap2a-203ENSMUST00000223869 2037 ntBASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Gm5566-201ENSMUST00000116118 459 ntBASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Rab11fip3Q8CHD8 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms