Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Scaf4Q6PFF0 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scaf4Q6PFF0 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Scaf4Q6PFF0 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Scaf4Q6PFF0 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scaf4Q6PFF0 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scaf4Q6PFF0 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scaf4Q6PFF0 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Gm11453-201ENSMUST00000117318 1007 ntBASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Gm15372-201ENSMUST00000120729 834 ntBASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Scaf4Q6PFF0 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Gm6659-201ENSMUST00000174752 547 ntBASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Scaf4Q6PFF0 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Scaf4Q6PFF0 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms