Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup98Q6PFD9 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup98Q6PFD9 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup98Q6PFD9 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Nup98Q6PFD9 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup98Q6PFD9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC17.31■□□□□ 0.36
Nup98Q6PFD9 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Carlr-201ENSMUST00000181515 2574 ntBASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Nup98Q6PFD9 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Gm12138-201ENSMUST00000122180 951 ntBASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Gm9794-201ENSMUST00000202370 423 ntBASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Gm18624-201ENSMUST00000220966 658 ntBASIC17.29■□□□□ 0.36
Nup98Q6PFD9 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.29■□□□□ 0.36
Nup98Q6PFD9 AC102291.3-201ENSMUST00000226566 405 ntBASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.29■□□□□ 0.36
Nup98Q6PFD9 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup98Q6PFD9 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms