Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Gm7222-201ENSMUST00000117512 906 ntBASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Gm14140-201ENSMUST00000119999 995 ntBASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh3rf1Q69ZI1 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Carlr-201ENSMUST00000181515 2574 ntBASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Sh3rf1Q69ZI1 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Gm3928-201ENSMUST00000121141 1307 ntBASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh3rf1Q69ZI1 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Sh3rf1Q69ZI1 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Sh3rf1Q69ZI1 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Sh3rf1Q69ZI1 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Sh3rf1Q69ZI1 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Gm14494-201ENSMUST00000118786 435 ntBASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 CT943659.1-201ENSMUST00000215459 326 ntBASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Sh3rf1Q69ZI1 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms