Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Gm5356-201ENSMUST00000093326 615 ntBASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Gm9200-201ENSMUST00000118513 1354 ntBASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Gm9182-201ENSMUST00000217829 639 ntBASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddb1Q3U1J4 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm12390-201ENSMUST00000117897 397 ntBASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm37230-201ENSMUST00000194491 818 ntBASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm44799-201ENSMUST00000207639 1202 ntBASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC18.74■□□□□ 0.59
Ddb1Q3U1J4 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Mir7654-201ENSMUST00000185082 70 ntBASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ddb1Q3U1J4 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 AC166574.6-201ENSMUST00000227889 1806 ntBASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Trav13-3-201ENSMUST00000117226 336 ntBASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms