Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Col28a1Q2UY11 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Col28a1Q2UY11 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Col28a1Q2UY11 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm13312-201ENSMUST00000119631 718 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm7862-201ENSMUST00000121461 292 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm1401-201ENSMUST00000122048 772 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Rprl3-201ENSMUST00000157400 290 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Mir5131-201ENSMUST00000175426 93 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm27867-201ENSMUST00000184778 125 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm43073-201ENSMUST00000198200 1189 ntBASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Col28a1Q2UY11 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Carlr-201ENSMUST00000181515 2574 ntBASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.44□□□□□ -0.1
Col28a1Q2UY11 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Col28a1Q2UY11 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Col28a1Q2UY11 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms