Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm18049-201ENSMUST00000208909 581 ntBASIC12.85□□□□□ -0.35
Nkx3-1P97436 AC125206.2-201ENSMUST00000217454 574 ntBASIC12.85□□□□□ -0.35
Nkx3-1P97436 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Asic1-205ENSMUST00000228185 1818 ntBASIC12.85□□□□□ -0.35
Nkx3-1P97436 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Nkx3-1P97436 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 AC131743.5-201ENSMUST00000220775 1618 ntBASIC12.84□□□□□ -0.35
Nkx3-1P97436 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gm27306-201ENSMUST00000183970 107 ntBASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gm27989-201ENSMUST00000184721 107 ntBASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 AC164567.1-201ENSMUST00000219185 960 ntBASIC12.84□□□□□ -0.35
Nkx3-1P97436 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Nkx3-1P97436 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Nkx3-1P97436 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Nkx3-1P97436 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.35
Nkx3-1P97436 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Nkx3-1P97436 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC12.83□□□□□ -0.36
Nkx3-1P97436 Gm13015-201ENSMUST00000118674 204 ntBASIC12.83□□□□□ -0.36
Nkx3-1P97436 Gm13453-201ENSMUST00000118708 357 ntBASIC12.83□□□□□ -0.36
Nkx3-1P97436 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Gm8116-201ENSMUST00000182917 1201 ntBASIC12.83□□□□□ -0.36
Nkx3-1P97436 Gm27437-201ENSMUST00000183429 107 ntBASIC12.83□□□□□ -0.36
Nkx3-1P97436 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Gm6888-201ENSMUST00000221983 706 ntBASIC12.83□□□□□ -0.36
Nkx3-1P97436 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Nkx3-1P97436 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nkx3-1P97436 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nkx3-1P97436 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Nkx3-1P97436 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Nkx3-1P97436 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC12.82□□□□□ -0.36
Nkx3-1P97436 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Nkx3-1P97436 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms