Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Thap2-203ENSMUST00000218989 527 ntBASIC14.13□□□□□ -0.15
Msx1P13297 AC124732.2-201ENSMUST00000221977 316 ntBASIC14.13□□□□□ -0.15
Msx1P13297 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.13□□□□□ -0.15
Msx1P13297 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
Msx1P13297 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Msx1P13297 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Msx1P13297 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Gm14363-201ENSMUST00000122304 409 ntBASIC14.12□□□□□ -0.15
Msx1P13297 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC14.12□□□□□ -0.15
Msx1P13297 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC14.12□□□□□ -0.15
Msx1P13297 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Gm22175-201ENSMUST00000175007 78 ntBASIC14.12□□□□□ -0.15
Msx1P13297 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Gm43125-201ENSMUST00000201724 730 ntBASIC14.12□□□□□ -0.15
Msx1P13297 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.12□□□□□ -0.15
Msx1P13297 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.12□□□□□ -0.15
Msx1P13297 Gm5628-201ENSMUST00000222318 1049 ntBASIC14.12□□□□□ -0.15
Msx1P13297 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Msx1P13297 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msx1P13297 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
Msx1P13297 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Msx1P13297 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Gm12849-201ENSMUST00000120013 739 ntBASIC14.11□□□□□ -0.15
Msx1P13297 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Msx1P13297 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Msx1P13297 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.11□□□□□ -0.15
Msx1P13297 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 AC154248.2-201ENSMUST00000221964 659 ntTSL 5 BASIC14.11□□□□□ -0.15
Msx1P13297 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msx1P13297 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Msx1P13297 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Msx1P13297 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC14.1□□□□□ -0.15
Msx1P13297 Mir449b-201ENSMUST00000104833 80 ntBASIC14.1□□□□□ -0.15
Msx1P13297 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC14.1□□□□□ -0.15
Msx1P13297 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC14.1□□□□□ -0.15
Msx1P13297 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC14.1□□□□□ -0.15
Msx1P13297 AC140375.2-201ENSMUST00000225283 584 ntBASIC14.1□□□□□ -0.15
Msx1P13297 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Msx1P13297 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msx1P13297 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 76.7 ms