Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim54Q9ERP3 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim54Q9ERP3 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim54Q9ERP3 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim54Q9ERP3 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim54Q9ERP3 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Gm6415-201ENSMUST00000118488 348 ntBASIC16.13■□□□□ 0.17
Trim54Q9ERP3 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Gm18737-201ENSMUST00000173594 937 ntBASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim54Q9ERP3 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 AC131743.5-201ENSMUST00000220775 1618 ntBASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gm38294-201ENSMUST00000192831 381 ntBASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim54Q9ERP3 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Gm9824-201ENSMUST00000178707 561 ntBASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Gm27618-201ENSMUST00000183671 60 ntBASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Gm27920-201ENSMUST00000183953 96 ntBASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim54Q9ERP3 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms