Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Mir1982-201ENSMUST00000157368 74 ntBASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Gm45841-201ENSMUST00000207700 164 ntBASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Gm19220-201ENSMUST00000222682 803 ntBASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx2-4Q9EQM3 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Gm45453-201ENSMUST00000211758 853 ntBASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Nkx2-4Q9EQM3 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx2-4Q9EQM3 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx2-4Q9EQM3 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx2-4Q9EQM3 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx2-4Q9EQM3 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC15.21■□□□□ 0.02
Nkx2-4Q9EQM3 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Gm12957-201ENSMUST00000117835 377 ntBASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Gm45331-201ENSMUST00000209868 554 ntBASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 AC162801.1-201ENSMUST00000220612 198 ntBASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.2■□□□□ 0.02
Nkx2-4Q9EQM3 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Ldha-ps-201ENSMUST00000119390 995 ntBASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Gm45098-201ENSMUST00000207179 657 ntBASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 AC238811.3-201ENSMUST00000225422 709 ntBASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx2-4Q9EQM3 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms