Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm16198-201ENSMUST00000118766 670 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Gm2272-201ENSMUST00000194903 582 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Gm43575-201ENSMUST00000196420 516 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Gm10154-201ENSMUST00000084445 354 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Vps28Q9D1C8 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Gm43352-201ENSMUST00000196419 3065 ntBASIC15.28■□□□□ 0.04
Vps28Q9D1C8 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Vps28Q9D1C8 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vps28Q9D1C8 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vps28Q9D1C8 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vps28Q9D1C8 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms