Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.98■□□□□ 0.47
Ccdc9Q8VC31 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Ccdc9Q8VC31 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc9Q8VC31 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ccdc9Q8VC31 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Gm21814-202ENSMUST00000203277 873 ntBASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Gm44414-201ENSMUST00000203660 2109 ntBASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.97■□□□□ 0.47
Ccdc9Q8VC31 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ccdc9Q8VC31 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ccdc9Q8VC31 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Ccdc9Q8VC31 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ccdc9Q8VC31 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ccdc9Q8VC31 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Gm12085-201ENSMUST00000119263 940 ntBASIC17.94■□□□□ 0.46
Ccdc9Q8VC31 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms