Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 AC154572.2-201ENSMUST00000225105 997 ntBASIC18.29■□□□□ 0.52
Trim27Q62158 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim27Q62158 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trim27Q62158 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Trim27Q62158 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim27Q62158 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim27Q62158 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Gm11779-201ENSMUST00000118541 368 ntBASIC18.28■□□□□ 0.52
Trim27Q62158 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
Trim27Q62158 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim27Q62158 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim27Q62158 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim27Q62158 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 Gm12260-201ENSMUST00000122447 411 ntBASIC18.27■□□□□ 0.52
Trim27Q62158 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim27Q62158 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC18.27■□□□□ 0.52
Trim27Q62158 Gm44492-201ENSMUST00000197012 141 ntBASIC18.27■□□□□ 0.52
Trim27Q62158 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim27Q62158 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim27Q62158 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Gm37297-201ENSMUST00000192974 2384 ntBASIC18.26■□□□□ 0.51
Trim27Q62158 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Trim27Q62158 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Trim27Q62158 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Trim27Q62158 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Gm12134-201ENSMUST00000122109 520 ntBASIC18.26■□□□□ 0.51
Trim27Q62158 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.26■□□□□ 0.51
Trim27Q62158 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 AC174742.1-201ENSMUST00000218272 304 ntBASIC18.26■□□□□ 0.51
Trim27Q62158 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Trim27Q62158 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim27Q62158 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 75.3 ms