Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Six4Q61321 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Six4Q61321 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Six4Q61321 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Six4Q61321 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Six4Q61321 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.04■□□□□ -0
Six4Q61321 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Six4Q61321 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.03■□□□□ -0
Six4Q61321 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Six4Q61321 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC15.03■□□□□ -0
Six4Q61321 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC15.03■□□□□ -0
Six4Q61321 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 AC132104.2-201ENSMUST00000215011 266 ntBASIC15.03■□□□□ -0
Six4Q61321 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.03■□□□□ -0
Six4Q61321 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
Six4Q61321 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Six4Q61321 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Six4Q61321 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC15.03■□□□□ -0
Six4Q61321 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.03■□□□□ -0
Six4Q61321 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
Six4Q61321 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Six4Q61321 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.02■□□□□ -0
Six4Q61321 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC15.02■□□□□ -0
Six4Q61321 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.02■□□□□ -0
Six4Q61321 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
Six4Q61321 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC15.02■□□□□ -0
Six4Q61321 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Six4Q61321 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.02■□□□□ -0
Six4Q61321 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC15.02■□□□□ -0
Six4Q61321 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Gm15500-202ENSMUST00000071641 1019 ntBASIC15.02■□□□□ -0
Six4Q61321 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Six4Q61321 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Six4Q61321 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Six4Q61321 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Six4Q61321 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Six4Q61321 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
Six4Q61321 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Six4Q61321 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Six4Q61321 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Six4Q61321 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.01□□□□□ -0.01
Six4Q61321 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.01□□□□□ -0.01
Six4Q61321 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC15.01□□□□□ -0.01
Six4Q61321 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC15.01□□□□□ -0.01
Six4Q61321 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC15.01□□□□□ -0.01
Six4Q61321 CT943659.1-201ENSMUST00000215459 326 ntBASIC15.01□□□□□ -0.01
Six4Q61321 AC225888.1-201ENSMUST00000227184 728 ntBASIC15.01□□□□□ -0.01
Six4Q61321 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Six4Q61321 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.01□□□□□ -0.01
Six4Q61321 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Six4Q61321 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.01□□□□□ -0.01
Six4Q61321 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms