Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Col17a1Q07563 Gm4271-201ENSMUST00000174444 973 ntBASIC22.55■■□□□ 1.2
Col17a1Q07563 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
Col17a1Q07563 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC22.55■■□□□ 1.2
Col17a1Q07563 Gm43094-201ENSMUST00000196549 921 ntBASIC22.55■■□□□ 1.2
Col17a1Q07563 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Col17a1Q07563 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC22.55■■□□□ 1.2
Col17a1Q07563 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Col17a1Q07563 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC22.55■■□□□ 1.2
Col17a1Q07563 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Col17a1Q07563 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Col17a1Q07563 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Col17a1Q07563 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Col17a1Q07563 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Col17a1Q07563 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC22.54■■□□□ 1.2
Col17a1Q07563 Gm6944-201ENSMUST00000182449 1006 ntBASIC22.54■■□□□ 1.2
Col17a1Q07563 Gm7467-201ENSMUST00000185173 652 ntBASIC22.54■■□□□ 1.2
Col17a1Q07563 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC22.54■■□□□ 1.2
Col17a1Q07563 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
Col17a1Q07563 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC22.54■■□□□ 1.2
Col17a1Q07563 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC22.54■■□□□ 1.2
Col17a1Q07563 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC22.54■■□□□ 1.2
Col17a1Q07563 AC153974.2-201ENSMUST00000218577 1025 ntBASIC22.54■■□□□ 1.2
Col17a1Q07563 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC22.54■■□□□ 1.2
Col17a1Q07563 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Col17a1Q07563 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Col17a1Q07563 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Col17a1Q07563 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Col17a1Q07563 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC22.53■■□□□ 1.2
Col17a1Q07563 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Gm13464-201ENSMUST00000119418 935 ntBASIC22.53■■□□□ 1.2
Col17a1Q07563 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
Col17a1Q07563 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC22.53■■□□□ 1.2
Col17a1Q07563 Gm21470-201ENSMUST00000187680 696 ntBASIC22.53■■□□□ 1.2
Col17a1Q07563 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Col17a1Q07563 Gm5069-202ENSMUST00000192714 1011 ntBASIC22.53■■□□□ 1.2
Col17a1Q07563 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col17a1Q07563 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col17a1Q07563 Gm6283-201ENSMUST00000182369 1000 ntBASIC22.52■■□□□ 1.2
Col17a1Q07563 AC154462.2-201ENSMUST00000227519 370 ntBASIC22.52■■□□□ 1.2
Col17a1Q07563 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col17a1Q07563 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col17a1Q07563 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Col17a1Q07563 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.19
Col17a1Q07563 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Col17a1Q07563 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
Col17a1Q07563 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Gm16401-202ENSMUST00000197463 2074 ntBASIC22.51■■□□□ 1.19
Col17a1Q07563 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 Gm11439-201ENSMUST00000118598 409 ntBASIC22.51■■□□□ 1.19
Col17a1Q07563 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC22.51■■□□□ 1.19
Col17a1Q07563 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Gm37230-201ENSMUST00000194491 818 ntBASIC22.51■■□□□ 1.19
Col17a1Q07563 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Gm21769-201ENSMUST00000211922 111 ntBASIC22.51■■□□□ 1.19
Col17a1Q07563 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Col17a1Q07563 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Col17a1Q07563 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Col17a1Q07563 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Col17a1Q07563 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Col17a1Q07563 Gm14017-201ENSMUST00000121934 386 ntBASIC22.5■■□□□ 1.19
Col17a1Q07563 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col17a1Q07563 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC22.5■■□□□ 1.19
Col17a1Q07563 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC22.5■■□□□ 1.19
Col17a1Q07563 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC22.5■■□□□ 1.19
Col17a1Q07563 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col17a1Q07563 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Col17a1Q07563 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC22.5■■□□□ 1.19
Col17a1Q07563 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC22.5■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms