Protein–RNA interactions for Protein: P54729

Nub1, NEDD8 ultimate buster 1, mousemouse

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nub1P54729 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nub1P54729 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nub1P54729 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nub1P54729 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nub1P54729 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Nub1P54729 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
Nub1P54729 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
Nub1P54729 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Gm43195-201ENSMUST00000200614 2332 ntBASIC16.04■□□□□ 0.16
Nub1P54729 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Nub1P54729 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC16.04■□□□□ 0.16
Nub1P54729 Gm5177-201ENSMUST00000183092 997 ntBASIC16.04■□□□□ 0.16
Nub1P54729 Gm43767-201ENSMUST00000198933 381 ntBASIC16.04■□□□□ 0.16
Nub1P54729 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.04■□□□□ 0.16
Nub1P54729 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Nub1P54729 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Nub1P54729 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC16.04■□□□□ 0.16
Nub1P54729 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Nub1P54729 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.03■□□□□ 0.16
Nub1P54729 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Nub1P54729 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Nub1P54729 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
Nub1P54729 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.03■□□□□ 0.16
Nub1P54729 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.03■□□□□ 0.16
Nub1P54729 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC16.03■□□□□ 0.16
Nub1P54729 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.03■□□□□ 0.16
Nub1P54729 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Nub1P54729 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.03■□□□□ 0.16
Nub1P54729 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.03■□□□□ 0.16
Nub1P54729 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Nub1P54729 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nub1P54729 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Nub1P54729 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Nub1P54729 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC16.02■□□□□ 0.16
Nub1P54729 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
Nub1P54729 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
Nub1P54729 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.02■□□□□ 0.16
Nub1P54729 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.02■□□□□ 0.16
Nub1P54729 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.02■□□□□ 0.16
Nub1P54729 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC16.02■□□□□ 0.16
Nub1P54729 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Nub1P54729 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Nub1P54729 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Nub1P54729 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Nub1P54729 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms