Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Trim3Q9R1R2 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gm27525-201ENSMUST00000184465 107 ntBASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gm37153-201ENSMUST00000193637 231 ntBASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 AC084391.1-201ENSMUST00000200651 141 ntBASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gm5364-201ENSMUST00000216789 889 ntBASIC14.07□□□□□ -0.16
Trim3Q9R1R2 AC122024.2-201ENSMUST00000220086 871 ntBASIC14.07□□□□□ -0.16
Trim3Q9R1R2 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Psmb5-202ENSMUST00000227257 622 ntBASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim3Q9R1R2 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim3Q9R1R2 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Gm11185-201ENSMUST00000117732 1007 ntBASIC14.05□□□□□ -0.16
Trim3Q9R1R2 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim3Q9R1R2 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms