Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.17
Trim39Q9ESN2 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 BC037039-201ENSMUST00000192003 2205 ntBASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Gm8097-201ENSMUST00000117903 829 ntBASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trim39Q9ESN2 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14□□□□□ -0.17
Trim39Q9ESN2 Gm8655-201ENSMUST00000221159 852 ntBASIC14□□□□□ -0.17
Trim39Q9ESN2 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Trim39Q9ESN2 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14□□□□□ -0.17
Trim39Q9ESN2 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
Trim39Q9ESN2 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trim39Q9ESN2 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trim39Q9ESN2 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Gm5837-201ENSMUST00000191844 1369 ntBASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Gm43347-201ENSMUST00000200226 580 ntBASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trim39Q9ESN2 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms